QUT offers a diverse range of student topics for Honours, Masters and PhD study. Search to find a topic that interests you or propose your own research topic to a prospective QUT supervisor. You may also ask a prospective supervisor to help you identify or refine a research topic.
Found 20 matching student topics
Displaying 1–12 of 20 results
Using machine learning to understand how the world’s microbiomes are changing due to climate
Shotgun metagenomic sequencing has become commonplace when studying microbial communities and their relationship with the health of our planet, and their direct effects on our own health. Currently, there are >180,000 shotgun metagenomes publicly available, but until recently trying to treat these data as a resource has been challenging due to its extreme size (>700 trillion base pairs).Recently we have developed a tool that can efficiently convert this base pair information into a straightforward assessment of which microorganisms are present …
- Study level
- PhD, Master of Philosophy, Honours
- Faculty
- Faculty of Health
- School
- School of Biomedical Sciences
- Research centre(s)
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Centre for Microbiome Research
Improving human health through the microbiome
Every person harbours a unique collection of microorganisms - the majority of which reside in the gastrointestinal tract - that influences nearly every aspect of human health. As such, the gut microbiome is emerging as a potential tool for the diagnosis and treatment of a wide range of diseases.However, microbiome studies yield vast amounts of data, and the complexity of the microbiome makes it difficult to decipher interactions between microorganisms, host cells and environmental factors.
- Study level
- PhD, Master of Philosophy, Honours
- Faculty
- Faculty of Health
- School
- School of Biomedical Sciences
- Research centre(s)
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Centre for Microbiome Research
Development of a multiplexed gut micro-bioreactor for functional screening of gut microbiome
The human microbiome refers to the collection of micro-organisms that are living symbiotically in the human body (defined as the “microbiota”), their genetic material as well as the surrounding environmental habitat.It is now appreciated that the microbiome plays an important role in human health and diseases. Various disease states have been linked to dysregulation of the gut microbiota, including neurodegenerative, cardiovascular and metabolic diseases. The composition of the gut microbiome can also affect responses to therapies, most notably in cancer …
- Study level
- PhD, Master of Philosophy
- Faculty
- Faculty of Engineering
- School
- School of Mechanical, Medical and Process Engineering
- Research centre(s)
- Centre for Biomedical Technologies
Centre for Microbiome Research
Symbiosis in microbial ecosystems
Soil systems are fundamentally important to the health of our planet, but the complexity of soil microbial communities makes them particularly challenging to study. Soil systems are amongst the most diverse microbial ecosystems on Earth in terms of the number of microbial species (and strains) present within individual samples, and in the breadth of functions encoded. Beyond complexity measured by counting distinct community members, interactions between microbial species including symbiosis, parasitism or commensalism are widespread and yet barely studied.
- Study level
- PhD, Master of Philosophy, Honours
- Faculty
- Faculty of Health
- School
- School of Biomedical Sciences
- Research centre(s)
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Centre for Microbiome Research
Multi-microbial 3D printing for screening microbiome functions
The ability to 3D print bacteria has relevance to a wide range of applications, ranging from developing novel anti-microbial modalities to probiotics for promoting human health. Traditional culture techniques used in microbiology such as agar plates and suspension cultures have limited spatio-temporal control over the bacteria microenvironment as well as their interaction partners, in particular, mammalian host cells. This project aims to bridge this technological gap by combining 3D printing and microfluidics technologies to spatially control the localisation of multiple …
- Study level
- PhD, Master of Philosophy
- Faculty
- Faculty of Health
- School
- School of Biomedical Sciences
Giant viruses in the human gut microbiome
The human body is home to a vast ecosystem of microorganisms including bacteria, archaea, fungi, viruses, and bacteriophages that make up the human microbiota. These microbes and their collective genetic material, known as the microbiome, influence a wide range of physiological functions including nutrient production and absorption, the development and regulation of our immune system, protection against potential pathogens, and even our mood and mental health. While distinct microbial communities exist throughout the body, the gut microbiome has gained particular …
- Study level
- Master of Philosophy, Honours
- Faculty
- Faculty of Health
- School
- School of Biomedical Sciences
- Research centre(s)
-
Centre for Microbiome Research
Identifying emergent ecosystem responses through genes-to-ecosystems integration at Stordalen Mire
Permafrost thaw induced by climate change is predicted to make up to 174 Pg of near-surface carbon (less than 3m below the surface) available for microbial degradation by 2100. Despite having major implications for human health, prediction of the magnitude of carbon loss as carbon dioxide (CO2) or methane (CH4) is hampered by our limited knowledge of microbial metabolism of organic matter in these environments.Genome-centric meta-omic analysis of microbial communities provides the necessary information to examine how specific lineages transform …
- Study level
- PhD, Master of Philosophy, Honours
- Faculty
- Faculty of Health
- School
- School of Biomedical Sciences
- Research centre(s)
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Centre for Microbiome Research
Comprehensive strain-level characterisation of microbial communities associated with inflammatory bowel disease
Inflammatory bowel disease (IBD) is a chronic, relapsing inflammatory disorder driven by complex interactions between environmental, microbial and immune-mediated factors 1,2. An unfavourable shift in gut microbiome composition, known as dysbiosis, is now considered a key feature of IBD 2-5, however it is unclear how specific microorganisms and their interactions with host cells contribute to disease onset and progression.Previous IBD studies have been largely limited to older sequencing methods with low phylogenetic and functional resolution. Furthermore, these studies have predominantly …
- Study level
- Master of Philosophy, Honours
- Faculty
- Faculty of Health
- School
- School of Biomedical Sciences
- Research centre(s)
-
Centre for Microbiome Research
From a descriptive to a predictive understanding of the human microbiome
Microorganisms have a profound influence on biological, environmental, and industrial processes, but understanding the complex dynamics of microbial communities and how to manipulate them to our advantage remains a challenge. CMR Director Professor Gene Tyson has recently been awarded a prestigious ARC Laureate Fellowship that aims to overcome current technological limitations and transform microbial ecology from a descriptive to a predictive science. This will be achieved using as a model the most intensively studied ecosystem on the planet: the human …
- Study level
- PhD
- Faculty
- Faculty of Health
- School
- School of Biomedical Sciences
- Research centre(s)
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Centre for Microbiome Research
HoliCOW – A holobiont strategy to decipher core host-microbiota interactions in cows
To meet the goal of limiting global warming to 1.5C, methane emissions from ruminants such as beef and dairy cattle must be reduced by 11–30% by 2030 and by 24–47% by 2050 compared to 2010 levels. A newly funded Future Fellowship project is hiring 2 PhD students who will tackle this challenge by creating a thorough mechanistic understanding of the microbiological, biochemical and genetic processes that cause methanogenesis in the cow rumen. These activities will identify core beneficial microbiota that …
- Study level
- PhD
- Faculty
- Faculty of Health
- School
- School of Biomedical Sciences
- Research centre(s)
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Centre for Microbiome Research
Novel algorithms for microbiome data
Metagenomics data is complex, high-volume data and keeps evolving, requiring novel computational method development as the wetlab approaches changes and databases grow. Thus, novel computational methods are required to take advantage of them.There are several potential projects under this topic, including:using deep learning to improve metagenomics assemblydeveloping better tools to analyse the presence of resistance genes in metagenomics datadeveloping approaches for estimating the quality of genomes from novel generation sequencespredicting the function of small sequences using more than just sequence.Interested …
- Study level
- PhD, Master of Philosophy, Honours
- Faculty
- Faculty of Health
- School
- School of Biomedical Sciences
- Research centre(s)
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Centre for Microbiome Research
Studying the small proteins of the global microbiome
As part of an ARC Future Fellowship project awarded to Luis Pedro Coelho, we aim to study small proteins with the aim of better understanding them and laying the groundwork for exploiting them for biotechnological purposes. Small proteins (up to 100 amino acids, but often much shorter) have vital roles in all areas of life, but have been neglected in research due to lack of methods.Particular projects in this topic include developing methods for determining function based on genomic context, …
- Study level
- PhD, Master of Philosophy, Honours
- Faculty
- Faculty of Health
- School
- School of Biomedical Sciences
- Research centre(s)
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Centre for Microbiome Research
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