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Found 15 matching student topics

Displaying 13–15 of 15 results

Representation learning for anti-microbial resistance

This project is about using neural network models help us understand Anti-Microbial Resistance (AMR), a phenomenon in which bacteria adapt to reduce the effectiveness of antibiotics, usually through a process known as Lateral or Horizontal Gene Transfer - where genes are included in the organism from other sources.Our focus will be on learning compact vector representations of biological sequences known to be associated with AMR genes. By encoding DNA sequences in this way we can more rapidly identify AMR genes …

Study level
PhD, Master of Philosophy, Honours
Faculty
Faculty of Science
School
School of Computer Science
Research centre(s)
Centre for Data Science

Investigation of genetic factors that contribute to concussion and its outcomes

The health outcomes from traumatic brain injuries (TBIs) and concussion depend on the nature of the injury, but response also varies greatly between individuals, suggesting that genetic factors may play a role. In particular, due to effects of head trauma on balances of ions, neurotransmitters and energy use in the brain, there is suggestion that variation in the genes that encode proteins involved in these pathways, e.g. ion channels, may affect the risk of, as well as response to a …

Study level
PhD, Master of Philosophy, Honours
Faculty
Faculty of Health
School
School of Biomedical Sciences

Information retrieval and coding methods for large scale bioinformatics

Advances in sequencing technologies over the past two decades have led to an explosion in the availability of genomic sequence data and an increasingly urgent need for scalable clustering and search facilities. One approach is to encode sequences as binary vectors in a high-dimensional space, simplifying the comparison and allowing it to be computed very rapidly using bit-level operations.Coupled with these ideas is the need to provide clustering methods and efficient indexing and lookup in response to search queries. One …

Study level
PhD, Master of Philosophy, Honours
Faculty
Faculty of Science
School
School of Computer Science
Research centre(s)
Centre for Data Science

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